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"""Fonduer paragraph mention model.""" from typing import Any, Dict, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import relationship from fonduer.candidates.models.temporary_context import TemporaryContext from fonduer.parser.models import Paragraph from fonduer.parse...
fonduer-master
src/fonduer/candidates/models/paragraph_mention.py
"""Fonduer implicit span mention model.""" from typing import Any, Dict, List, Optional, Type from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.dialects import postgresql from sqlalchemy.orm import backref, relationship from sqlalchemy.sql import text from sqlalchemy.types im...
fonduer-master
src/fonduer/candidates/models/implicit_span_mention.py
"""Fonduer's candidate model module.""" from fonduer.candidates.models.candidate import Candidate, candidate_subclass from fonduer.candidates.models.caption_mention import CaptionMention from fonduer.candidates.models.cell_mention import CellMention from fonduer.candidates.models.document_mention import DocumentMention...
fonduer-master
src/fonduer/candidates/models/__init__.py
"""Fonduer caption mention model.""" from typing import Any, Dict, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import relationship from fonduer.candidates.models.temporary_context import TemporaryContext from fonduer.parser.models import Caption from fonduer.parser.mo...
fonduer-master
src/fonduer/candidates/models/caption_mention.py
"""Fonduer span mention model.""" from typing import Any, Dict, List, Optional, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import backref, relationship from sqlalchemy.types import PickleType from fonduer.candidates.models.temporary_context import TemporaryContext fr...
fonduer-master
src/fonduer/candidates/models/span_mention.py
"""Fonduer candidate model.""" import logging from typing import Any, Dict, List, Optional, Tuple, Type from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.candidates.models.mention import Mention from fonduer.meta import Meta from...
fonduer-master
src/fonduer/candidates/models/candidate.py
"""Fonduer section mention model.""" from typing import Any, Dict, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import relationship from fonduer.candidates.models.temporary_context import TemporaryContext from fonduer.parser.models import Section from fonduer.parser.mo...
fonduer-master
src/fonduer/candidates/models/section_mention.py
"""Fonduer mention model.""" import logging from typing import Any, Dict, List, Optional, Tuple, Type from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.meta import Meta from fonduer.parser.models import Context from fonduer.utils...
fonduer-master
src/fonduer/candidates/models/mention.py
"""Fonduer document mention model.""" from typing import Any, Dict, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import relationship from fonduer.candidates.models.temporary_context import TemporaryContext from fonduer.parser.models import Document from fonduer.parser....
fonduer-master
src/fonduer/candidates/models/document_mention.py
"""Fonduer temporary mention model.""" from builtins import object from typing import Any, Dict, Type from fonduer.parser.models.context import Context class TemporaryContext(object): """Temporary Context class. A context which does not incur the overhead of a proper ORM-based Context object. The Tempor...
fonduer-master
src/fonduer/candidates/models/temporary_context.py
"""Fonduer cell mention model.""" from typing import Any, Dict, Type from sqlalchemy import Column, ForeignKey, Integer, UniqueConstraint from sqlalchemy.orm import relationship from fonduer.candidates.models.temporary_context import TemporaryContext from fonduer.parser.models import Cell from fonduer.parser.models.c...
fonduer-master
src/fonduer/candidates/models/cell_mention.py
"""Customized MLflow model for Fonduer.""" import logging import os import sys from io import BytesIO from typing import Any, Callable, Dict, List, Optional, Union import cloudpickle as pickle import emmental import numpy as np import torch import yaml from emmental.model import EmmentalModel from mlflow import pyfunc...
fonduer-master
src/fonduer/packaging/fonduer_model.py
"""Fonduer's packaging module.""" from fonduer.packaging.fonduer_model import FonduerModel, log_model, save_model __all__ = [ "FonduerModel", "save_model", "log_model", ]
fonduer-master
src/fonduer/packaging/__init__.py
"""Customized Emmental task for Fonduer.""" import logging from functools import partial from typing import Any, Dict, List, Optional, Union from emmental.modules.embedding_module import EmbeddingModule from emmental.modules.rnn_module import RNN from emmental.modules.sparse_linear_module import SparseLinear from emme...
fonduer-master
src/fonduer/learning/task.py
"""Fonduer's learning module."""
fonduer-master
src/fonduer/learning/__init__.py
"""Fonduer dataset.""" import logging from typing import Any, Dict, List, Optional, Tuple, Union import numpy as np import torch from emmental.data import EmmentalDataset from scipy.sparse import csr_matrix from torch import Tensor from fonduer.candidates.models import Candidate from fonduer.learning.utils import mar...
fonduer-master
src/fonduer/learning/dataset.py
"""Fonduer learning utils.""" import logging from collections import Counter from typing import Dict, List, Set, Tuple, Union import numpy as np from sqlalchemy.orm import Session from fonduer.candidates.models import Candidate, Mention from fonduer.learning.models.marginal import Marginal logger = logging.getLogger...
fonduer-master
src/fonduer/learning/utils.py
"""Fonduer's learning model module.""" from fonduer.learning.models.marginal import Marginal from fonduer.learning.models.prediction import Prediction, PredictionKey __all__ = ["Marginal", "Prediction", "PredictionKey"]
fonduer-master
src/fonduer/learning/models/__init__.py
"""Fonduer learning prediction model.""" from sqlalchemy import Column, Float from fonduer.meta import Meta from fonduer.utils.models.annotation import AnnotationKeyMixin, AnnotationMixin class PredictionKey(AnnotationKeyMixin, Meta.Base): """A Prediction's annotation key.""" pass class Prediction(Annotat...
fonduer-master
src/fonduer/learning/models/prediction.py
"""Fonduer learning marginal model.""" from sqlalchemy import Boolean, Column, Float, ForeignKey, Integer, UniqueConstraint from fonduer.meta import Meta class Marginal(Meta.Base): """ A marginal probability corresponding to a (Candidate, value) pair. Represents: P(candidate = value) = probabil...
fonduer-master
src/fonduer/learning/models/marginal.py
"""Fonduer's learning modules."""
fonduer-master
src/fonduer/learning/modules/__init__.py
"""Soft cross entropy loss.""" from typing import List import torch from torch import Tensor, nn as nn from torch.nn import functional as F class SoftCrossEntropyLoss(nn.Module): """Calculate the CrossEntropyLoss with soft targets. :param weight: Weight to assign to each of the classes. Default: None :p...
fonduer-master
src/fonduer/learning/modules/soft_cross_entropy_loss.py
"""Concat linear.""" from typing import Any, Dict, List import torch from torch import Tensor, nn as nn class ConcatLinear(nn.Module): """Concat different outputs and feed into a linear layer. :param concat_output_keys: The keys of features to concat. :param input_dim: The total sum of input dim. :p...
fonduer-master
src/fonduer/learning/modules/concat_linear.py
"""Fonduer featurizer.""" import itertools import logging from collections import defaultdict from typing import ( Any, Collection, DefaultDict, Dict, Iterable, List, Optional, Type, Union, ) from scipy.sparse import csr_matrix from sqlalchemy.orm import Session from fonduer.candid...
fonduer-master
src/fonduer/features/featurizer.py
"""Fonduer's features module.""" from fonduer.features.feature_extractors import FeatureExtractor from fonduer.features.featurizer import Featurizer __all__ = ["Featurizer", "FeatureExtractor"]
fonduer-master
src/fonduer/features/__init__.py
"""Fonduer feature extractor.""" from typing import Callable, Dict, Iterator, List, Tuple, Union from fonduer.candidates.models import Candidate from fonduer.features.feature_libs.structural_features import ( extract_structural_features, ) from fonduer.features.feature_libs.tabular_features import extract_tabular_...
fonduer-master
src/fonduer/features/feature_extractors.py
"""Fonduer visual feature extractor.""" from typing import Dict, Iterator, List, Set, Tuple, Union from fonduer.candidates.models import Candidate from fonduer.candidates.models.span_mention import SpanMention, TemporarySpanMention from fonduer.utils.data_model_utils import ( get_visual_aligned_lemmas, is_horz...
fonduer-master
src/fonduer/features/feature_libs/visual_features.py
"""Fonduer tabular feature extractor.""" from typing import Dict, Iterator, List, Set, Tuple, Union from fonduer.candidates.models import Candidate from fonduer.candidates.models.span_mention import SpanMention, TemporarySpanMention from fonduer.utils.config import get_config from fonduer.utils.data_model_utils import...
fonduer-master
src/fonduer/features/feature_libs/tabular_features.py
"""Fonduer textual feature extractor.""" from builtins import range from typing import Any, Callable, Dict, Iterator, List, Set, Tuple, Union from treedlib import ( Children, Compile, Indicator, LeftNgrams, LeftSiblings, Mention, Ngrams, Parents, RightNgrams, RightSiblings, ...
fonduer-master
src/fonduer/features/feature_libs/textual_features.py
"""Fonduer's feature library module.""" from fonduer.features.feature_libs.structural_features import ( extract_structural_features, ) from fonduer.features.feature_libs.tabular_features import extract_tabular_features from fonduer.features.feature_libs.textual_features import extract_textual_features from fonduer....
fonduer-master
src/fonduer/features/feature_libs/__init__.py
"""Fonduer tree structs.""" import re from functools import lru_cache from typing import Any, Dict, List, Optional, Union from lxml import etree as et from lxml.etree import _Element from fonduer.parser.models import Sentence from fonduer.utils.utils import get_as_dict class XMLTree: """A generic tree represent...
fonduer-master
src/fonduer/features/feature_libs/tree_structs.py
"""Fonduer structural feature extractor.""" from typing import Dict, Iterator, List, Set, Tuple, Union from fonduer.candidates.models import Candidate from fonduer.candidates.models.span_mention import SpanMention, TemporarySpanMention from fonduer.utils.data_model_utils import ( common_ancestor, get_ancestor_...
fonduer-master
src/fonduer/features/feature_libs/structural_features.py
"""Fonduer's feature model module.""" from fonduer.features.models.feature import Feature, FeatureKey __all__ = ["Feature", "FeatureKey"]
fonduer-master
src/fonduer/features/models/__init__.py
"""Fonduer feature model.""" from sqlalchemy import Column, Float from sqlalchemy.dialects import postgresql from fonduer.meta import Meta from fonduer.utils.models.annotation import AnnotationKeyMixin, AnnotationMixin class FeatureKey(AnnotationKeyMixin, Meta.Base): """A feature's key that identifies the defini...
fonduer-master
src/fonduer/features/models/feature.py
"""Fonduer basic config and config utils.""" import logging import os from typing import Dict import yaml MAX_CONFIG_SEARCH_DEPTH = 25 # Max num of parent directories to look for config logger = logging.getLogger(__name__) default = { "featurization": { "textual": { "window_feature": {"size"...
fonduer-master
src/fonduer/utils/config.py
"""Fonduer visual utils.""" import warnings from typing import NamedTuple class Bbox(NamedTuple): """Bounding box.""" page: int top: int bottom: int left: int right: int def bbox_from_span(span) -> Bbox: # type: ignore """Get bounding box from span. :param span: The input span. ...
fonduer-master
src/fonduer/utils/utils_visual.py
"""Fonduer tabular utils.""" import itertools from builtins import range from functools import lru_cache from typing import List, Optional, Tuple, Union from fonduer.parser.models.sentence import Sentence from fonduer.parser.models.table import Cell @lru_cache(maxsize=1024) def _min_range_diff(coordinates: Tuple[Tup...
fonduer-master
src/fonduer/utils/utils_table.py
"""Fonduer's utils module."""
fonduer-master
src/fonduer/utils/__init__.py
"""Fonduer parser utils.""" from typing import List, Optional, Tuple def build_node(type: str, name: str, content: str) -> str: """ Wrap up content in to a html node. :param type: content type (e.g., doc, section, text, figure) :param name: content name (e.g., the name of the section) :param name...
fonduer-master
src/fonduer/utils/utils_parser.py
"""Fonduer UDF utils.""" import logging from typing import ( Any, Callable, Dict, Iterable, Iterator, List, Optional, Sequence, Set, Tuple, Type, Union, ) import numpy as np from scipy.sparse import csr_matrix from sqlalchemy import String, Table from sqlalchemy.dialects...
fonduer-master
src/fonduer/utils/utils_udf.py
"""Fonduer utils.""" import re from builtins import range from typing import TYPE_CHECKING, Dict, Iterator, List, Set, Tuple, Type, Union from fonduer.parser.models import Context, Document, Sentence if TYPE_CHECKING: # to prevent circular imports from fonduer.candidates.models import Candidate def camel_to_un...
fonduer-master
src/fonduer/utils/utils.py
"""Fonduer UDF.""" import logging from multiprocessing import Manager, Process from queue import Queue from threading import Thread from typing import Any, Collection, Dict, List, Optional, Set, Type, Union from sqlalchemy import inspect from sqlalchemy.orm import Session, scoped_session, sessionmaker from fonduer.me...
fonduer-master
src/fonduer/utils/udf.py
"""Fonduer visualizer.""" import logging import os import subprocess import warnings from builtins import object from collections import defaultdict from typing import DefaultDict, List, Optional, Tuple from bs4 import BeautifulSoup from IPython.display import DisplayHandle, display from wand.color import Color from w...
fonduer-master
src/fonduer/utils/visualizer.py
"""Fonduer annotation model.""" from typing import Tuple from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.dialects import postgresql from sqlalchemy.ext.declarative import declared_attr from sqlalchemy.orm import backref, relationship from fonduer.utils.utils import camel_t...
fonduer-master
src/fonduer/utils/models/annotation.py
"""Fonduer's utils model module.""" from fonduer.utils.models.annotation import AnnotationKeyMixin, AnnotationMixin __all__ = ["AnnotationKeyMixin", "AnnotationMixin"]
fonduer-master
src/fonduer/utils/models/__init__.py
"""Fonduer structural modality utilities.""" import functools from builtins import str from typing import List, Optional, Tuple, Union import numpy as np from lxml import etree from lxml.etree import _ElementTree from lxml.html import HtmlElement, fromstring from fonduer.candidates.models import Candidate, Mention fr...
fonduer-master
src/fonduer/utils/data_model_utils/structural.py
"""Fonduer textual modality utilities.""" from itertools import chain from typing import Iterator, Union from fonduer.candidates.models import Candidate, Mention from fonduer.candidates.models.span_mention import TemporarySpanMention from fonduer.utils.data_model_utils.utils import _to_span, _to_spans from fonduer.uti...
fonduer-master
src/fonduer/utils/data_model_utils/textual.py
"""Fonduer tabular modality utilities.""" from builtins import range from collections import defaultdict from functools import lru_cache from itertools import chain from typing import DefaultDict, Iterator, List, Optional, Set, Tuple, Union import deprecation from fonduer import __version__ from fonduer.candidates.mo...
fonduer-master
src/fonduer/utils/data_model_utils/tabular.py
"""Fonduer's data model utils module.""" from fonduer.utils.data_model_utils.structural import ( common_ancestor, get_ancestor_class_names, get_ancestor_id_names, get_ancestor_tag_names, get_attributes, get_next_sibling_tags, get_parent_tag, get_prev_sibling_tags, get_tag, lowest...
fonduer-master
src/fonduer/utils/data_model_utils/__init__.py
"""Fonduer data model utils.""" import logging from functools import lru_cache from typing import Callable, Iterable, List, Set, Union from fonduer.candidates.models import Candidate, Mention from fonduer.candidates.models.span_mention import TemporarySpanMention @lru_cache(maxsize=1024) def _to_span( x: Union[C...
fonduer-master
src/fonduer/utils/data_model_utils/utils.py
"""Fonduer visual modality utilities.""" from builtins import range from collections import defaultdict from functools import lru_cache from typing import Any, DefaultDict, Iterator, List, Set, Union from fonduer.candidates.mentions import Ngrams from fonduer.candidates.models import Candidate, Mention from fonduer.ca...
fonduer-master
src/fonduer/utils/data_model_utils/visual.py
"""Fonduer's logging module.""" from fonduer.utils.logging.tensorboard_writer import TensorBoardLogger __all__ = ["TensorBoardLogger"]
fonduer-master
src/fonduer/utils/logging/__init__.py
"""Fonduer tensorboard logger.""" from tensorboardX import SummaryWriter class TensorBoardLogger(object): """A class for logging to Tensorboard during training process.""" def __init__(self, log_dir: str): """Create a summary writer logging to log_dir.""" self.writer = SummaryWriter(log_dir) ...
fonduer-master
src/fonduer/utils/logging/tensorboard_writer.py
"""Fonduer's parser module.""" from fonduer.parser.parser import Parser __all__ = ["Parser"]
fonduer-master
src/fonduer/parser/__init__.py
"""Fonduer parser.""" import itertools import logging import re import warnings from builtins import range from collections import defaultdict from typing import ( Any, Collection, Dict, Iterator, List, Optional, Pattern, Tuple, Union, ) import lxml.etree import lxml.html from lxml....
fonduer-master
src/fonduer/parser/parser.py
"""Fonduer document preprocessor.""" import glob import os import sys from typing import Iterator, List from fonduer.parser.models.document import Document class DocPreprocessor(object): """An abstract class of a ``Document`` generator. Unless otherwise stated by a subclass, it's assumed that there is one `...
fonduer-master
src/fonduer/parser/preprocessors/doc_preprocessor.py
"""Fonduer hOCR document preprocessor.""" import codecs import os import re import sys from typing import Iterator, Optional, Tuple from bs4 import BeautifulSoup from bs4.element import Comment, NavigableString, Tag from fonduer.parser.models import Document from fonduer.parser.preprocessors.doc_preprocessor import D...
fonduer-master
src/fonduer/parser/preprocessors/hocr_doc_preprocessor.py
"""Fonduer's parser preprocessor module.""" from fonduer.parser.preprocessors.csv_doc_preprocessor import CSVDocPreprocessor from fonduer.parser.preprocessors.doc_preprocessor import DocPreprocessor from fonduer.parser.preprocessors.hocr_doc_preprocessor import HOCRDocPreprocessor from fonduer.parser.preprocessors.html...
fonduer-master
src/fonduer/parser/preprocessors/__init__.py
"""Fonduer HTML document preprocessor.""" import codecs import os from typing import Iterator from bs4 import BeautifulSoup from fonduer.parser.models import Document from fonduer.parser.preprocessors.doc_preprocessor import DocPreprocessor class HTMLDocPreprocessor(DocPreprocessor): """A ``Document`` generator...
fonduer-master
src/fonduer/parser/preprocessors/html_doc_preprocessor.py
"""Fonduer text document preprocessor.""" import codecs import os from typing import Iterator from fonduer.parser.models import Document from fonduer.parser.preprocessors.doc_preprocessor import DocPreprocessor from fonduer.utils.utils_parser import build_node class TextDocPreprocessor(DocPreprocessor): """A ``D...
fonduer-master
src/fonduer/parser/preprocessors/text_doc_preprocessor.py
"""Fonduer CSV document preprocessor.""" import codecs import csv import os import sys from typing import Callable, Dict, Iterator, Optional from fonduer.parser.models import Document from fonduer.parser.preprocessors.doc_preprocessor import DocPreprocessor from fonduer.utils.utils_parser import build_node, column_con...
fonduer-master
src/fonduer/parser/preprocessors/csv_doc_preprocessor.py
"""Fonduer TSV document preprocessor.""" import codecs import sys from typing import Iterator from fonduer.parser.models import Document from fonduer.parser.preprocessors.doc_preprocessor import DocPreprocessor from fonduer.utils.utils_parser import build_node class TSVDocPreprocessor(DocPreprocessor): """A ``Do...
fonduer-master
src/fonduer/parser/preprocessors/tsv_doc_preprocessor.py
"""A simple alternative tokenizer which parses text by splitting on whitespace.""" from typing import Any, Dict, Iterator import numpy as np from fonduer.parser.lingual_parser.lingual_parser import LingualParser class SimpleParser(LingualParser): """Tokenizes text on whitespace only using split(). :param d...
fonduer-master
src/fonduer/parser/lingual_parser/simple_parser.py
"""Fonduer's lingual parser module.""" from fonduer.parser.lingual_parser.lingual_parser import LingualParser from fonduer.parser.lingual_parser.simple_parser import SimpleParser from fonduer.parser.lingual_parser.spacy_parser import SpacyParser __all__ = ["LingualParser", "SpacyParser", "SimpleParser"]
fonduer-master
src/fonduer/parser/lingual_parser/__init__.py
"""Fonduer Spacy parser.""" import importlib import logging from collections import defaultdict from pathlib import Path from string import whitespace from typing import Any, Collection, Dict, Iterator, List, Optional import spacy from spacy import util from spacy.cli import download from spacy.language import Languag...
fonduer-master
src/fonduer/parser/lingual_parser/spacy_parser.py
"""Fonduer lingual parser.""" from typing import Collection, Iterable, Iterator from fonduer.parser.models import Sentence class LingualParser(object): """Lingual parser.""" def split_sentences(self, text: str) -> Iterable[dict]: """ Split input text into sentences. :param text: tex...
fonduer-master
src/fonduer/parser/lingual_parser/lingual_parser.py
"""Fonduer webpage context model.""" from sqlalchemy import Column, ForeignKey, Integer, String from fonduer.parser.models.context import Context class Webpage(Context): """A Webpage Context enhanced with additional metadata.""" __tablename__ = "webpage" #: The unique id of the ``Webpage``. id = Co...
fonduer-master
src/fonduer/parser/models/webpage.py
"""Fonduer figure context model.""" from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.parser.models.context import Context class Figure(Context): """A figure Context in a Document. Used to represent figures in a documen...
fonduer-master
src/fonduer/parser/models/figure.py
"""Fonduer's parser model module.""" from fonduer.parser.models.caption import Caption from fonduer.parser.models.context import Context from fonduer.parser.models.document import Document from fonduer.parser.models.figure import Figure from fonduer.parser.models.paragraph import Paragraph from fonduer.parser.models.se...
fonduer-master
src/fonduer/parser/models/__init__.py
"""Fonduer section context model.""" from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.parser.models.context import Context class Section(Context): """A Section Context in a Document. .. note:: As of v0.6.2, each docume...
fonduer-master
src/fonduer/parser/models/section.py
"""Fonduer caption context model.""" from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.parser.models.context import Context class Caption(Context): """A Caption Context in a Document. Used to represent figure or table c...
fonduer-master
src/fonduer/parser/models/caption.py
"""Fonduer sentence context model.""" from builtins import object from typing import Any, Dict from sqlalchemy import Column, ForeignKey, Integer, String, Text, UniqueConstraint from sqlalchemy.dialects import postgresql from sqlalchemy.ext.declarative import declared_attr from sqlalchemy.orm import backref, relations...
fonduer-master
src/fonduer/parser/models/sentence.py
"""Fonduer context model.""" from sqlalchemy import Column, Integer, String from fonduer.meta import Meta class Context(Meta.Base): """A piece of content from which Candidates are composed. This serves as the base class of the Fonduer document model. """ __tablename__ = "context" #: The unique...
fonduer-master
src/fonduer/parser/models/context.py
"""Utilities for constructing and splitting stable ids.""" from typing import List, Tuple from fonduer.parser.models import Context def construct_stable_id( parent_context: Context, polymorphic_type: str, relative_char_offset_start: int, relative_char_offset_end: int, ) -> str: """Construct Conte...
fonduer-master
src/fonduer/parser/models/utils.py
"""Fonduer document context model.""" from sqlalchemy import Column, ForeignKey, Integer, String from sqlalchemy.types import PickleType from fonduer.parser.models.context import Context class Document(Context): """A document Context. Represents all the information of a particular document. What becomes...
fonduer-master
src/fonduer/parser/models/document.py
"""Fonduer paragraph context model.""" from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.parser.models.context import Context class Paragraph(Context): """A paragraph Context in a Document. Represents a grouping of adja...
fonduer-master
src/fonduer/parser/models/paragraph.py
"""Fonduer table context model.""" from sqlalchemy import Column, ForeignKey, Integer, String, UniqueConstraint from sqlalchemy.orm import backref, relationship from fonduer.parser.models.context import Context class Table(Context): """A Table Context in a Document. Used to represent tables found in a docum...
fonduer-master
src/fonduer/parser/models/table.py
"""Fonduer visual parser that parses visual information from hOCR.""" import itertools import re from typing import Dict, Iterable, Iterator, List, Pattern, Tuple, Union import spacy import spacy.gold from packaging import version from spacy.gold import align from fonduer.parser.models import Sentence from fonduer.pa...
fonduer-master
src/fonduer/parser/visual_parser/hocr_visual_parser.py
"""Fonduer's visual parser module.""" from fonduer.parser.visual_parser.hocr_visual_parser import HocrVisualParser from fonduer.parser.visual_parser.pdf_visual_parser import PdfVisualParser from fonduer.parser.visual_parser.visual_parser import VisualParser __all__ = ["VisualParser", "PdfVisualParser", "HocrVisualPars...
fonduer-master
src/fonduer/parser/visual_parser/__init__.py
"""Fonduer visual parser that parses visual information from PDF.""" import logging import os import re import shutil import subprocess from builtins import range, zip from collections import OrderedDict, defaultdict from operator import attrgetter from typing import DefaultDict, Dict, Iterable, Iterator, List, Optiona...
fonduer-master
src/fonduer/parser/visual_parser/pdf_visual_parser.py
"""Abstract visual parser.""" from abc import ABC, abstractmethod from typing import Iterable, Iterator from fonduer.parser.models import Sentence class VisualParser(ABC): """Abstract visual parer.""" @abstractmethod def parse( self, document_name: str, sentences: Iterable[Senten...
fonduer-master
src/fonduer/parser/visual_parser/visual_parser.py
"""Fonduer's supervision module.""" from fonduer.supervision.labeler import Labeler __all__ = ["Labeler"]
fonduer-master
src/fonduer/supervision/__init__.py
"""Fonduer labeler.""" import logging from collections import defaultdict from typing import ( Any, Callable, Collection, DefaultDict, Dict, Iterable, Iterator, List, Optional, Tuple, Type, Union, ) import numpy as np from sqlalchemy import Table from sqlalchemy.orm impo...
fonduer-master
src/fonduer/supervision/labeler.py
"""Fonduer's supervision model module.""" from fonduer.supervision.models.label import ( GoldLabel, GoldLabelKey, Label, LabelKey, StableLabel, ) __all__ = ["GoldLabel", "GoldLabelKey", "Label", "LabelKey", "StableLabel"]
fonduer-master
src/fonduer/supervision/models/__init__.py
"""Fonduer label model.""" from sqlalchemy import Column, Integer, String from sqlalchemy.dialects import postgresql from fonduer.meta import Meta from fonduer.utils.models.annotation import AnnotationKeyMixin, AnnotationMixin class GoldLabelKey(AnnotationKeyMixin, Meta.Base): """Gold label key class. A gol...
fonduer-master
src/fonduer/supervision/models/label.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import setuptools setuptools.setup( name="ctrl-benchmark", version="0.0.3", author="Tom Veniat, Ludovic Denoyer & Marc'Aurelio Ra...
CTrLBenchmark-master
setup.py
from .streams import get_stream
CTrLBenchmark-master
ctrl/__init__.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import logging import os import random from collections import defaultdict import torch import torchvision from sklearn.decomposition import ...
CTrLBenchmark-master
ctrl/tasks/task.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree.
CTrLBenchmark-master
ctrl/tasks/__init__.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import logging import os import random import time from types import SimpleNamespace import numpy as np import torch import torch.nn.function...
CTrLBenchmark-master
ctrl/tasks/task_generator.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import torch from ctrl.transformations.transformation_tree import TransformationTree from torch import nn from tqdm import tqdm class NoisyN...
CTrLBenchmark-master
ctrl/transformations/noisy_nn_transformation.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import torch class Transformation(object): def __init__(self, transfo_pool, path, trans_descr): assert path[0] == transfo_pool.r...
CTrLBenchmark-master
ctrl/transformations/transformation.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. from functools import partial import torch from ctrl.transformations.transformation_tree import TransformationTree from ctrl.transformations....
CTrLBenchmark-master
ctrl/transformations/rainbow_transformation.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import abc class TransformationPool(abc.ABC): @abc.abstractmethod def get_transformation(self, exclude_trans=None): raise No...
CTrLBenchmark-master
ctrl/transformations/transformation_pool.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import numpy as np from ctrl.transformations.transformation_tree import TransformationTree from torchvision import transforms from torchvisio...
CTrLBenchmark-master
ctrl/transformations/img_rotations.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. from .identity_transformation import IdentityTransformation from .img_rotations import ImgRotationTransformationTree from .noisy_nn_transforma...
CTrLBenchmark-master
ctrl/transformations/__init__.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import numpy as np import torch import torchvision.transforms.functional as F from PIL import Image from ctrl.transformations.transformation_t...
CTrLBenchmark-master
ctrl/transformations/identity_transformation.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import torch class BatchedTransformation(object): def __init__(self, transfo, descr=None): self.transfo = transfo self.d...
CTrLBenchmark-master
ctrl/transformations/utils.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import logging import random from abc import ABC from collections import defaultdict from numbers import Number import networkx as nx from to...
CTrLBenchmark-master
ctrl/transformations/transformation_tree.py
# Copyright (c) Facebook, Inc. and its affiliates. # # This source code is licensed under the MIT license found in the # LICENSE file in the root directory of this source tree. import torch from ctrl.transformations.transformation_tree import TransformationTree from ctrl.transformations.utils import BatchedTransformat...
CTrLBenchmark-master
ctrl/transformations/randperm_transformation.py